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Citing CMDGA
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Annotation type
1
caQTL
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
4
cell line
3
primary cell
Biosample term
20
endothelial cell of umbilical vein
16
endothelial cell of hepatic sinusoid
8
fibroblast of pulmonary artery
7
pulmonary artery endothelial cell
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
kidney capillary endothelial cell
4
aortic endothelial cell
4
pancreatic endothelial cell
3
smooth muscle cell of the coronary artery
2
capillary endothelial cell
2
endothelial cell of coronary artery
1
brain microvascular endothelial cell
1
aortic smooth muscle cell
1
placental villus capillary endothelial cell
Organ
3
artery
3
blood vessel
3
heart
3
vasculature
Life stage
1
adult
Date released
1
February, 2020
1
February, 2023
1
May, 2021
Software used
1
abc
1
r
1
rasqual
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
effector T cell
organ_slims!
skin of body
Showing 3 of 3 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP