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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
binding sites
1
caQTL
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
4
cell line
2
primary cell
Biosample term
89
heart
86
stomach
33
heart left ventricle
20
coronary artery
19
heart right ventricle
17
fibroblast of cardiac tissue
17
right atrium auricular region
14
Peyer's patch
12
left cardiac atrium
9
stomach smooth muscle
8
right cardiac atrium
7
gastroesophageal sphincter
6
GM18507
6
smooth muscle cell of the coronary artery
5
endocardial cell
4
cardiac fibroblast
4
mucosa of stomach
3
germinal center
3
left ventricle myocardium
3
parietal cell
3
peptic cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
foveolar cell of stomach
2
stomach neuroendocrine cell
2
ventricular cardiac muscle cell
1
aortic valve
1
cardiac ventricle
1
endothelial cell of coronary artery
1
esophagus - gastroesophageal junction
1
fetal heart
1
gastric (mucosa of stomach)
1
gastric goblet cell
1
mitral valve
1
pulmonary valve
1
small intestine - terminal Ileum
1
tricuspid valve
Organ
6
artery
6
blood vessel
6
heart
6
vasculature
0
lymphoid tissue
0
stomach
Life stage
1
adult
1
unknown
Date released
4
February, 2021
February, 2020
1
February, 2023
1
May, 2021
Software used
3
macs
1
abc
1
r
1
rasqual
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
February, 2020
Showing 6 of 6 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP