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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
107
monocyte
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
33
B cell
33
endothelial cell
30
fibroblast
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
22
macrophage
21
smooth muscle cell
19
hepatocyte
18
natural killer cell
16
T cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
foreskin keratinocyte
15
keratinocyte
14
endothelial cell of umbilical vein
14
foreskin fibroblast
14
mononuclear cell
14
regulatory T cell
13
fibroblast of lung
13
trophoblast cell
12
CD4-positive, alpha-beta T cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
mammary epithelial cell
12
osteoblast
12
pancreatic beta cell
11
T-helper 1 cell
11
pancreatic alpha cell
11
pancreatic ductal cell
11
skeletal muscle myoblast
10
T-helper 17 cell
10
T-helper 2 cell
10
mammary gland epithelial cell
10
neurosphere
10
pancreatic delta cell
9
bronchial epithelial cell
9
erythroblast
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
pancreatic acinar cell
9
skeletal muscle satellite cell
8
dermis blood vessel endothelial cell
8
glutamatergic neuron
8
mast cell
8
retinal pigment epithelial cell
7
cardiac muscle cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of proximal tubule
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
hepatic stellate cell
6
kidney tubule cell
6
luminal epithelial cell of mammary gland
6
memory B cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skin fibroblast
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
adipocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
endocardial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
glomerular endothelial cell
5
inhibitory neuron
5
kidney epithelial cell
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
enteric smooth muscle cell
4
fibroblast of the aortic adventitia
4
glomerular visceral epithelial cell
4
kidney glomerular epithelial cell
4
lung microvascular endothelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
3
activated CD4-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
astrocyte of the spinal cord
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
fibroblast of gingiva
3
fibroblast of peridontal ligament
3
fibroblast of the conjunctiva
3
goblet cell
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
non-pigmented ciliary epithelial cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
renal epithelial cell
3
schwann cell
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Ishikawa
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th1 cell
2
Th17 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythrocyte
2
erythroid cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
mature neutrophil
Organ
4
esophagus
Date released
4
November, 2021
Software used
2
abc
2
macs
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
month_released!
June, 2020
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR738CKV
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR513MXE
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR279PTE
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKX
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE