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Clear Filters
Annotation type
  • 4candidate regulatory elements
  • 3chromatin state
  • 2target gene predictions
Annotation Category
  • 7cis-regulatory elements
  • 2Target gene links
Annotation type Category
  • 9ChIP-seq
  • 6DNase-seq
Available data
  • 7bed bed3+
  • 2bed bed9
File set status
  • 9released
Genome assembly (visualization)
  • 9hg19
  • 2GRCh38
Organism
  • 9Homo sapiens
Biosample type
  • 9tissue
Biosample term
  • 67muscle of arm
  • 58muscle of leg
  • 54muscle of back
  • 20psoas muscle
  • 18gastrocnemius medialis
  • 17muscle of trunk
  • 16skeletal muscle tissue
  • 13skeletal muscle satellite cell
  • 11esophagus muscularis mucosa
  • 9skeletal muscle fiber
  • 9stomach smooth muscle
  • 7LHCN-M2
  • 7gastroesophageal sphincter
  • 7skeletal muscle
  • 7type I muscle cell
  • 7type II muscle cell
  • 6skeletal muscle cell
  • 5A673
  • 5SJCRH30
  • 5gastrocnemius medialis(Muscle - Skeletal)
  • 5left ventricle myocardium
  • 5myotube
  • 4rectum smooth muscle tissue
  • 2 hindlimb muscle
  • 2 muscle of leg
  • 2cardiac muscle myoblast
  • 2forelimb muscle
  • 2respiratory system smooth muscle
  • 2somatic muscle myotube
  • 1aortic smooth muscle cell
  • 1esophagus - gastroesophageal junction
  • 1esophagus - muscularis
  • 1hindlimb muscle
  • 1rectal smooth muscle tissue
  • 1smooth muscle tissue
Organ
  • 9musculature of body
  • 9stomach
Life stage
  • 8adult
Date released
  • 6September, 2022
  • 2February, 2021
  • 1August, 2017
Software used
  • 4r
  • 3chromhmm
  • 2encode-ccres
Lab
  • 8AMP-T2D consortium
  • 1Stephen Parker, UMich
Project
  • 9AMP
Collection Tags
  • 6EpiMap
  • 2ENCODE
RFA
  • 9AMP

Showing 9 of 9 results

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  • FileSet

    DSR422YSS

    released

    Annotation file set: Candidate regulatory elements for BSS01660 stomach smooth muscle from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR424EOF

    released

    Annotation file set: Candidate regulatory elements for BSS01659 stomach smooth muscle from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR346MCM

    released

    Annotation file set: Target gene predictions for BSS01660 stomach smooth muscle from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR125HFK

    released

    Annotation file set: Target gene predictions for BSS01659 stomach smooth muscle from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR842KSL

    released

    Annotation file set: Chromatin states for BSS01660 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR289BEC

    released

    Annotation file set: Chromatin states for BSS01659 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR595FEF

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE stomach smooth muscle
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR501NLZ

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE stomach smooth muscle
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    TSTSR469602

    released

    Annotation file set: ChromHMM 13-state model for stomach smooth muscle
    Lab: Stephen Parker, UMich
    Project: AMP
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