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Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2636
whole blood
134
monocyte
110
heart
105
stomach
95
kidney
89
brain
89
fibroblast
86
head of caudate nucleus
85
endothelial cell
84
muscle of arm
82
lung
81
placenta
75
A549
75
adrenal gland
75
small intestine
72
macrophage
70
CD8-positive, alpha-beta T cell
70
muscle of leg
69
large intestine
69
muscle of back
67
HeLa-S3
67
left lung
66
T-cell
65
B cell
65
common myeloid progenitor, CD34-positive
64
smooth muscle cell
63
CD4-positive, alpha-beta T cell
59
dorsolateral prefrontal cortex
56
right lung
56
thymus
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
53
H1-hESC
52
neural progenitor cell
52
right kidney
51
renal cortex interstitium
50
hepatocyte
50
natural killer cell
50
renal pelvis
49
liver
48
posterior cingulate gyrus
47
K562
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
42
adipocyte
40
spinal cord
38
spleen
37
CD4-positive, alpha-beta memory T cell
37
cardiac muscle cell
34
pericyte
33
activated CD4-positive, alpha-beta T cell
32
MCF-7
32
T-helper 1 cell
30
adipose tissue
30
glutamatergic neuron
30
keratinocyte
29
heart right ventricle
29
pancreatic ductal cell
28
T-helper 17 cell
28
astrocyte
28
ovary
28
regulatory T cell
28
tibial nerve
27
body of pancreas
27
naive thymus-derived CD4-positive, alpha-beta T cell
27
pancreas
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
26
trophoblast cell
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
CD14-positive monocyte
24
foreskin keratinocyte
24
neuron
24
psoas muscle
23
EndoC_BH1
23
caudate nucleus
23
endothelial cell of lymphatic vessel
23
gastrocnemius medialis
23
sigmoid colon
23
upper lobe of left lung
22
GABAergic neuron
22
H9
22
HCT116
22
foreskin fibroblast
22
glomerular endothelial cell
21
endothelial cell of umbilical vein
21
right atrium auricular region
21
testis
21
thyroid gland
21
tibial artery
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
subcutaneous adipose tissue
19
HFFc6
19
hepatic stellate cell
19
mesenchymal stem cell
19
omental fat pad
19
transverse colon
18
HepG2
18
ascending aorta
18
dendritic cell
18
embryonic stem cell
18
endocardial cell
18
pancreatic beta cell
18
pigmented layer of retina
17
Peyer's patch
17
frontal cortex
17
muscle of trunk
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
mast cell
16
substantia nigra
15
GM12878
15
activated T-cell
15
bronchial epithelial cell
15
erythroblast
15
fibroblast of cardiac tissue
15
induced pluripotent stem cell
15
pancreatic alpha cell
15
retinal pigment epithelial cell
15
skeletal muscle satellite cell
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
layer of hippocampus
14
left renal cortex interstitium
14
mammary epithelial cell
14
right renal pelvis
14
skeletal muscle myoblast
14
skeletal muscle tissue
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
naive B cell
13
osteoblast
13
pancreatic acinar cell
13
prostate gland
12
Ammon's horn
12
SK-N-DZ
12
breast epithelium
12
colonic mucosa
12
fibroblast of dermis
12
left renal pelvis
12
mammary gland epithelial cell
12
pancreatic delta cell
11
choroid plexus epithelial cell
11
epithelial cell of prostate
11
esophagus muscularis mucosa
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
11
putamen
11
thoracic aorta
10
IMR-90
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
limb
10
lymphoblastoid cell line
10
neuroblastoma cell
10
neuronal stem cell
9
22Rv1
9
GM06990
9
SK-N-MC
9
SK-N-SH
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
globus pallidus
9
kidney tubule cell
9
lower leg skin
9
pericyte cell
9
progenitor cell
9
temporal lobe
9
tongue
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
NAMALWA cell
8
PC-9
8
T47D
8
cingulate gyrus
8
duodenal mucosa
8
epithelial cell of esophagus
Organ
2
thyroid gland
1
adrenal gland
1
connective tissue
Life stage
3
fetal
Date released
3
July, 2026
1
November, 2021
Software used
abc
1
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
Collection Tags
3
HDMA
1
AMP
1
T2DKP
RFA
3
AMP
1
ENCODE3
software_used.software.name!
abc
Showing 4 of 4 results
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Download
FileSet
DSR896004
released
Annotation file set
: Accessible chromatin sites for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR005535
released
Annotation file set
: Target gene predictions for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR557705
released
Annotation file set
: Target gene predictions for Adrenal stromal (COL3A1+ TRPC6+; possibly mix of fibroblasts & pericytes; mix of all samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR171WWO
released
Annotation file set
: Accessible chromatin annotation of Peripheral Nerve Stromal from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE