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Getting started
Schema
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2636
whole blood
103
heart
103
stomach
86
head of caudate nucleus
83
brain
83
muscle of arm
82
kidney
82
lung
78
placenta
76
adrenal gland
75
small intestine
74
fibroblast
73
A549
71
endothelial cell
69
muscle of back
69
muscle of leg
68
HeLa-S3
68
T-cell
68
large intestine
67
left lung
66
common myeloid progenitor, CD34-positive
63
CD4-positive, alpha-beta T cell
60
smooth muscle cell
59
B cell
59
dorsolateral prefrontal cortex
59
macrophage
55
right lung
55
stimulated activated CD4-positive, alpha-beta T cell
54
thymus
52
hematopoietic multipotent progenitor cell
52
right kidney
51
H1-hESC
50
renal cortex interstitium
48
posterior cingulate gyrus
48
renal pelvis
47
natural killer cell
45
K562
45
left kidney
43
liver
40
CD8-positive, alpha-beta T cell
40
heart left ventricle
39
CD14-positive monocyte
39
hepatocyte
38
islet of Langerhans
37
CD4-positive, alpha-beta memory T cell
37
T cell
37
adipocyte
37
spinal cord
36
spleen
34
pericyte
32
activated CD4-positive, alpha-beta T cell
32
cardiac muscle cell
31
T-helper 1 cell
30
monocyte
28
MCF-7
28
T-helper 17 cell
28
adipose tissue
28
body of pancreas
28
heart right ventricle
28
ovary
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
glutamatergic neuron
26
trophoblast cell
25
epithelial cell of proximal tubule
25
naive thymus-derived CD4-positive, alpha-beta T cell
25
sigmoid colon
25
tibial nerve
24
dendritic cell
24
neuron
24
psoas muscle
23
H9
23
gastrocnemius medialis
23
keratinocyte
23
pancreas
23
regulatory T cell
22
GABAergic neuron
22
HCT116
22
astrocyte
22
endothelial cell of lymphatic vessel
22
neural progenitor cell
21
foreskin keratinocyte
21
naive thymus-derived CD8-positive, alpha-beta T cell
21
thyroid gland
21
transverse colon
20
caudate nucleus
20
endothelial cell of umbilical vein
20
glomerular endothelial cell
20
muscle of trunk
20
upper lobe of left lung
19
HFFc6
19
mononuclear cell
19
pancreatic ductal cell
18
coronary artery
18
omental fat pad
18
retina
18
right atrium auricular region
18
testis
18
tibial artery
17
ascending aorta
17
endocardial cell
17
fibroblast of lung
17
foreskin fibroblast
17
subcutaneous adipose tissue
17
substantia nigra
16
Peyer's patch
16
chorionic villus
16
induced pluripotent stem cell
16
left renal cortex interstitium
15
activated T-cell
15
cerebellum
15
frontal cortex
15
mast cell
15
mesenchymal stem cell
15
right renal pelvis
15
skeletal muscle tissue
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
left renal pelvis
14
right lobe of liver
14
right renal cortex interstitium
13
GM12878
13
dermis blood vessel endothelial cell
13
fibroblast of dermis
13
layer of hippocampus
13
naive B cell
13
neurosphere
13
neutrophil
13
pericyte cell
13
skeletal muscle myoblast
13
thyroid follicular cell
12
EndoC_BH1
12
breast epithelium
12
hepatic stellate cell
12
left cardiac atrium
12
putamen
12
temporal lobe
11
Ammon's horn
11
HepG2
11
SK-N-SH
11
erythroblast
11
mammary gland epithelial cell
11
progenitor cell
11
vagina
10
colonic mucosa
10
fibroblast of cardiac tissue
10
inflammatory macrophage
10
prostate gland
10
thoracic aorta
10
tongue
9
B Cell
9
SK-N-DZ
9
WI38
9
bronchial epithelial cell
9
cardiomyocytes
9
epithelial cell of prostate
9
esophagus
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
eye
9
glomerular visceral epithelial cell
9
kidney tubule cell
9
limb
9
lower leg skin
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
right cardiac atrium
9
skeletal muscle satellite cell
9
type B pancreatic cell
9
uterus
8
22Rv1
8
LNCaP clone FGC
8
T47D
8
cingulate gyrus
8
duodenal mucosa
8
epithelial cell of esophagus
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
8
retinal pigment epithelial cell
7
A673
7
CD4-positive, CD25-positive, alpha-beta regulatory T cell
7
HAP-1
7
IMR-90
7
angular gyrus
7
cardiac fibroblast
7
cardiomyocytes (cardiac muscle cell)
7
cell of skeletal muscle
7
effector memory CD8-positive, alpha-beta T cell
7
embryonic stem cell
7
endodermal cell
7
endometrium adenocarcinoma
Organ
2
thyroid gland
1
adrenal gland
1
connective tissue
Life stage
3
fetal
Date released
3
July, 2026
1
November, 2021
Software used
1
abc
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
Collection Tags
3
HDMA
1
AMP
1
T2DKP
RFA
3
AMP
1
ENCODE3
software_used.software.name!
macs
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR896004
released
Annotation file set
: Accessible chromatin sites for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR005535
released
Annotation file set
: Target gene predictions for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR557705
released
Annotation file set
: Target gene predictions for Adrenal stromal (COL3A1+ TRPC6+; possibly mix of fibroblasts & pericytes; mix of all samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619FXG
released
Annotation file set
: Target gene predictions of Peripheral Nerve Stromal from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE