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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
eQTL
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
8
tsv
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
22
adipocyte
20
adipose tissue
17
foreskin fibroblast
15
mesenchymal stem cell
14
osteoblast
13
fibroblast of lung
12
fibroblast
11
fibroblast of cardiac tissue
9
fibroblast of dermis
9
omental fat pad
8
skin fibroblast
7
chondrocyte
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
subcutaneous adipose tissue
6
GM23248
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
pancreatic stellate cell
4
brain pericyte
4
cardiac fibroblast
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
preadipocyte
3
HT1080
3
fibroblast of gingiva
3
pericyte cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
adipose tissue derived mesenchymal stem cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
cartilage tissue
2
columnar chondrocyte
2
extracellular matrix secreting cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
adult endothelial progenitor cell
1
beige adipocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
white adipose cell
1
white adipose tissue
Organ
7
adipose tissue
7
connective tissue
Life stage
4
adult
Date released
2
February, 2021
1
August, 2017
1
August, 2021
1
January, 2020
1
May, 2020
1
September, 2018
Software used
2
encode-ccres
2
macs
1
chromhmm
1
deltasvm
1
epacts
1
fast-lmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
month_released!
February, 2020
November, 2021
Showing 7 of 7 results
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Download
FileSet
DSR669QFK
released
Annotation file set
: eQTLs from RNA microarray samples from 770 males who are part of the METSIM study of subcutaneous adipose tissue for GSE70353
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR673AWN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR178YJU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802UOO
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose white tissue ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR687BVG
released
Annotation file set
: Accessible chromatin annotation of adipose white tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR978YHK
released
Annotation file set
: ATAC-seq sites in subcutaneous adipose tissue for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP