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Schema
Citing CMDGA
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Annotation type
2
variant allelic effects
1
chromatin state
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
heart
3
islet of Langerhans
3
tibial artery
3
tibial nerve
2
muscle of leg
2
coronary artery
2
heart left ventricle
2
left renal cortex interstitium
2
medulla oblongata
2
midbrain
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Pancreatic islets
1
adipose tissue
1
ascending aorta
1
body of pancreas
1
brain
1
caudate nucleus
1
cerebellum (Hemisphere)
1
frontal cortex
1
globus pallidus
1
heart right ventricle
1
kidney
1
left cardiac atrium
1
left renal pelvis
1
middle frontal gyrus
1
muscle of arm
1
occipital lobe
1
pancreas
1
pons
1
putamen
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right renal pelvis
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
Organ
3
limb
3
nerve
Life stage
2
adult
Date released
9
September, 2022
3
February, 2020
3
February, 2021
3
March, 2020
3
May, 2020
1
January, 2020
1
January, 2022
1
June, 2020
1
November, 2019
Software used
2
deltasvm
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
thymus
vein
Showing 3 of 3 results
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Download
FileSet
DSR872IOC
released
Annotation file set
: Genetic variants with deltaSVM predictions in tibial nerve ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168URY
released
Annotation file set
: Genetic variants with deltaSVM predictions in nerve tibial DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205IDN
released
Annotation file set
: ChromHMM 18-state model for nerve tibial from 28 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP