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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3
1
bed narrowPeak
File set status
1
released
Genome assembly (visualization)
1
GRCh38
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
2636
whole blood
132
monocyte
110
heart
106
stomach
95
kidney
91
fibroblast
88
endothelial cell
87
brain
86
head of caudate nucleus
84
muscle of arm
81
lung
81
placenta
76
A549
76
adrenal gland
75
small intestine
73
CD8-positive, alpha-beta T cell
71
muscle of leg
70
large intestine
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
67
smooth muscle cell
66
B cell
66
common myeloid progenitor, CD34-positive
65
macrophage
64
CD4-positive, alpha-beta T cell
58
dorsolateral prefrontal cortex
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
neural progenitor cell
52
right kidney
51
renal cortex interstitium
50
natural killer cell
50
renal pelvis
49
liver
48
K562
48
posterior cingulate gyrus
45
adipocyte
45
left kidney
43
heart left ventricle
42
retina
41
T cell
40
spinal cord
39
CD14-positive monocyte
38
cardiac muscle cell
38
spleen
37
CD4-positive, alpha-beta memory T cell
36
islet of Langerhans
33
MCF-7
33
keratinocyte
32
activated CD4-positive, alpha-beta T cell
32
glutamatergic neuron
32
pericyte
31
T-helper 1 cell
31
astrocyte
31
pancreatic ductal cell
30
adipose tissue
29
heart right ventricle
28
body of pancreas
28
ovary
28
trophoblast cell
27
T-helper 17 cell
27
pancreas
27
tibial nerve
26
CD8-positive, alpha-beta memory T cell
26
epithelial cell of proximal tubule
26
naive thymus-derived CD4-positive, alpha-beta T cell
26
regulatory T cell
25
T-helper 2 cell
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
24
sigmoid colon
23
EndoC_BH1
23
H9
23
foreskin fibroblast
23
upper lobe of left lung
22
GABAergic neuron
22
HCT116
22
caudate nucleus
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
21
coronary artery
21
thyroid gland
21
tibial artery
20
breast cancer cell
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
right atrium auricular region
20
testis
19
HFFc6
19
HepG2
19
endocardial cell
19
hepatic stellate cell
19
mesenchymal stem cell
19
omental fat pad
19
subcutaneous adipose tissue
19
transverse colon
18
ascending aorta
18
embryonic stem cell
18
muscle of trunk
18
pancreatic beta cell
17
Peyer's patch
17
erythroblast
17
fibroblast of lung
16
GM12878
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
frontal cortex
16
induced pluripotent stem cell
16
mast cell
16
pigmented layer of retina
15
activated T-cell
15
bronchial epithelial cell
15
cerebellum
15
mammary epithelial cell
15
pancreatic acinar cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
substantia nigra
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
left renal cortex interstitium
14
osteoblast
14
right renal pelvis
14
skeletal muscle satellite cell
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
mammary gland epithelial cell
13
naive B cell
13
pancreatic alpha cell
13
pancreatic delta cell
13
prostate gland
13
skeletal muscle tissue
12
Ammon's horn
12
SK-N-DZ
12
colonic mucosa
12
epithelial cell of prostate
12
left renal pelvis
11
IMR-90
11
SK-N-SH
11
choroid plexus epithelial cell
11
layer of hippocampus
11
neuronal stem cell
11
neurosphere
11
progenitor cell of endocrine pancreas
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
limb
10
neuroblastoma cell
10
neutrophil
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus muscularis mucosa
9
eye
9
globus pallidus
9
kidney tubule cell
9
lower leg skin
9
progenitor cell
9
putamen
9
temporal lobe
9
tongue
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
Organ
1
musculature of body
Life stage
1
adult
Date released
1
July, 2025
Software used
qTLtools
1
macs
Encyclopedia version
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
1
Stephen Parker, UMich
Project
1
AMP
RFA
1
AMP2
software_used.software.name!
qTLtools
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Download
FileSet
DSR059OPJ
released
Annotation file set
: Accessible chromatin annotation of each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - type 2x muscle cell
Lab:
Stephen Parker, UMich
Project:
AMP