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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
128
monocyte
55
HeLa-S3
51
CD8-positive, alpha-beta T cell
51
H1-hESC
41
endothelial cell
41
islet of Langerhans
39
kidney
39
neural progenitor cell
33
heart
31
hepatocyte
31
retina
30
fibroblast
28
stomach
26
liver
25
macrophage
25
pancreatic ductal cell
23
EndoC_BH1
23
K562
23
brain
22
smooth muscle cell
20
B cell
20
adipocyte
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
embryonic stem cell
18
glomerular endothelial cell
18
heart left ventricle
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
17
placenta
17
small intestine
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
regulatory T cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
14
cardiac muscle cell
14
coronary artery
14
spleen
14
thymus
14
tibial nerve
13
GM12878
13
H9
13
astrocyte
13
endothelial cell of umbilical vein
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
spinal cord
12
T-helper 1 cell
12
caudate nucleus
12
excitatory neuron
12
foreskin fibroblast
12
mammary epithelial cell
12
natural killer cell
12
neuroblastoma cell
12
pancreatic delta cell
12
right lung
11
adipose tissue
11
body of pancreas
11
erythroblast
11
mesenchymal stem cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
omental fat pad
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
T cell
10
T-helper 17 cell
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right atrium auricular region
10
right kidney
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
heart right ventricle
9
liposarcoma
9
putamen
9
substantia nigra
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
pituitary stalk
8
skeletal muscle fiber
8
testis
7
CD4-positive helper T cell
7
Jurkat
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mature neutrophil
7
memory B cell
7
ovary
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
amygdala
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
plasma cell
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
Glomerular Capillary Endothelial Cell
5
HAP-1
HCT-116 cell
5
KARPAS-422 cell
5
Non-Classical Monocyte
5
PC-9
5
SGBS preadipocytes
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
Organ
7
musculature of body
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
biosample_term_name!
HCT-116 cell
month_released!
January, 2022
September, 2022
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP