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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
128
monocyte
69
heart
64
stomach
62
HeLa-S3
57
A549
56
brain
56
kidney
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
muscle of leg
44
neural progenitor cell
42
CD8-positive, alpha-beta T cell
41
large intestine
40
common myeloid progenitor, CD34-positive
40
liver
39
left lung
39
muscle of back
38
K562
37
thymus
35
islet of Langerhans
35
retina
34
B cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
right kidney
30
renal pelvis
29
renal cortex interstitium
28
hepatocyte
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
heart left ventricle
27
left kidney
26
spinal cord
24
regulatory T cell
24
spleen
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
20
T-helper 1 cell
20
adipocyte
20
body of pancreas
20
pigmented layer of retina
19
HFFc6
T-helper 17 cell
19
coronary artery
18
MCF-7
18
caudate nucleus
18
right atrium auricular region
18
trophoblast cell
17
mononuclear cell
17
pancreas
17
pancreatic ductal cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
T cell
16
heart right ventricle
16
macrophage
16
natural killer cell
16
ovary
15
T-helper 2 cell
15
frontal cortex
15
mesenchymal stem cell
15
pancreatic beta cell
15
subcutaneous adipose tissue
15
thyroid gland
14
endothelial cell
14
endothelial cell of hepatic sinusoid
14
endothelial cell of umbilical vein
13
GM12878
13
HepG2
13
ascending aorta
13
fibroblast of lung
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
pancreatic delta cell
13
substantia nigra
13
transverse colon
12
cerebellum
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
foreskin keratinocyte
12
muscle of trunk
12
pancreatic alpha cell
11
Ammon's horn
11
aorta
11
fibroblast of dermis
11
putamen
11
skeletal muscle myoblast
11
testis
10
H9
10
Peyer's patch
10
foreskin fibroblast
10
left cardiac atrium
10
mammary gland epithelial cell
10
pancreatic acinar cell
10
pancreatic stellate cell
10
retinal pigment epithelial cell
10
skeletal muscle tissue
9
fibroblast of cardiac tissue
9
kidney tubule cell
9
layer of hippocampus
9
osteoblast
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
chorion membrane
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle satellite cell
8
smooth muscle cell
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
NAMALWA cell
7
SK-N-DZ
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular endothelial cell
7
limb
7
lymphoblastoid cell line
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
colonic mucosa
6
glomerular visceral epithelial cell
6
hepatic stellate cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
skin fibroblast
6
tongue
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
Organ
5
musculature of body
Life stage
1
unknown
Date released
3
February, 2024
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
RFA
4
AMP2
1
AMP
biosample_term_name!
T-helper 17 cell
lab.title!
Bing Ren, UCSD
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP