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Citing CMDGA
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Annotation type
2
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
67
muscle of arm
63
small intestine
58
muscle of leg
56
large intestine
54
muscle of back
23
sigmoid colon
20
psoas muscle
19
transverse colon
18
gastrocnemius medialis
18
testis
17
muscle of trunk
16
skeletal muscle tissue
14
Peyer's patch
11
esophagus muscularis mucosa
10
colonic mucosa
9
duodenal mucosa
9
mucosa of rectum
9
skeletal muscle satellite cell
9
stomach smooth muscle
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
LHCN-M2
7
SW480
7
gastroesophageal sphincter
6
HCT116
6
NT2-D1 cell
6
skeletal muscle cell
6
skeletal muscle fiber
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
type I muscle cell
5
type II muscle cell
4
HCT-116 cell
4
RKO
4
rectum smooth muscle tissue
3
colon epithelial cell
3
enterocyte
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
Caco-2
1
Crypt of Lieberkuhn
1
Leydig cell
1
LoVo
1
NT2/D1
1
aortic smooth muscle cell
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
smooth muscle tissue
Organ
5
musculature of body
0
intestine
0
testis
Life stage
1
unknown
Date released
3
February, 2024
November, 2021
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
Project
5
AMP
RFA
4
AMP2
1
AMP
month_released!
November, 2021
Showing 5 of 5 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP