Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Annotation type
3
accessible chromatin
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
2636
whole blood
135
monocyte
110
heart
107
stomach
95
kidney
92
fibroblast
90
endothelial cell
89
brain
86
head of caudate nucleus
84
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
small intestine
75
A549
74
macrophage
73
CD8-positive, alpha-beta T cell
71
muscle of leg
70
large intestine
69
muscle of back
69
smooth muscle cell
68
T-cell
67
HeLa-S3
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
59
dorsolateral prefrontal cortex
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
53
H1-hESC
52
hepatocyte
52
neural progenitor cell
52
right kidney
51
natural killer cell
51
renal cortex interstitium
50
liver
50
renal pelvis
48
posterior cingulate gyrus
47
K562
46
adipocyte
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
40
spinal cord
39
CD14-positive monocyte
39
spleen
37
CD4-positive, alpha-beta memory T cell
37
cardiac muscle cell
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
32
MCF-7
32
T-helper 1 cell
32
glutamatergic neuron
32
pericyte
31
adipose tissue
31
astrocyte
31
pancreatic ductal cell
29
heart right ventricle
29
ovary
28
T-helper 17 cell
28
body of pancreas
28
pancreas
28
regulatory T cell
28
tibial nerve
28
trophoblast cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
25
epithelial cell of proximal tubule
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
24
sigmoid colon
23
EndoC_BH1
23
H9
23
caudate nucleus
23
upper lobe of left lung
22
GABAergic neuron
22
HCT116
22
glomerular endothelial cell
22
thyroid gland
21
coronary artery
21
endothelial cell of umbilical vein
21
foreskin fibroblast
21
right atrium auricular region
21
testis
21
tibial artery
20
breast cancer cell
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
subcutaneous adipose tissue
20
transverse colon
19
HFFc6
19
endocardial cell
19
hepatic stellate cell
19
mesenchymal stem cell
19
omental fat pad
18
HepG2
18
ascending aorta
18
embryonic stem cell
18
muscle of trunk
18
pancreatic beta cell
17
Peyer's patch
17
frontal cortex
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
mast cell
16
pigmented layer of retina
16
skeletal muscle satellite cell
16
substantia nigra
15
GM12878
15
activated T-cell
15
bronchial epithelial cell
15
erythroblast
15
mammary epithelial cell
15
pancreatic acinar cell
15
pancreatic alpha cell
15
pancreatic delta cell
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
fibroblast of lung
14
layer of hippocampus
14
left renal cortex interstitium
14
osteoblast
14
retinal pigment epithelial cell
14
right renal pelvis
14
skeletal muscle myoblast
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
mammary gland epithelial cell
13
naive B cell
13
prostate gland
12
Ammon's horn
12
SK-N-DZ
12
colonic mucosa
12
epithelial cell of prostate
12
fibroblast of dermis
12
left renal pelvis
11
esophagus muscularis mucosa
11
neuronal stem cell
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
11
putamen
11
thoracic aorta
10
IMR-90
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
limb
10
lymphoblastoid cell line
10
neuroblastoma cell
10
thyroid follicular cell
9
22Rv1
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-SH
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
globus pallidus
9
kidney tubule cell
9
lower leg skin
9
progenitor cell
9
temporal lobe
9
tongue
8
B Cell
8
GM06990
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
8
WERI-Rb-1
8
cingulate gyrus
8
colon epithelial cell
Organ
6
musculature of body
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Lab
3
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
AMP
2
ENCODE
Collection Tags
3
T2DKP
3
DGA
2
AMP
2
T2DKP
1
T2D
RFA
3
AMP2
2
ENCODE3
1
AMP
month_released!
October, 2022
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP