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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
67
lung
62
A549
54
H1-hESC
52
left lung
45
right lung
23
trophoblast cell
16
H9
16
chorionic villus
16
fibroblast of lung
16
upper lobe of left lung
10
endodermal cell
10
trophoblast
9
IMR-90
8
PC-9
8
mesodermal cell
7
WI38
7
type II pneumocyte
6
H7-hESC
6
HUES6
6
HUES8
5
CyT49
5
H4
5
HUES64
5
ectodermal cell
5
lung microvascular endothelial cell
4
ELF-1
4
HUES48
4
NCI-H226 cell
4
NCI-H460 cell
4
UCSF-4
4
embryonic facial prominence
4
type I pneumocyte
3
ES-I3
3
cardiac mesoderm primordium
3
hESC H9
3
primordial germ cell
2
first pancreatic bud
1
H1
1
H7
1
NCI-H226
1
NCI-H460
1
cardiogenic mesoderm
1
embryonic fibroblast
1
endothelial cell of artery
1
lung neuroendocrine cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
morula
1
placental hematopoietic stem cell
1
trophoblast giant cell
Organ
4
epithelium
4
lung
0
embryo
Date released
3
November, 2021
1
April, 2020
Software used
2
macs
1
abc
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
month_released!
March, 2020
November, 2020
Showing 4 of 4 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR767ZHU
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR436AKV
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE