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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
68
lung
62
A549
52
left lung
45
right lung
41
K562
16
GM12878
16
fibroblast of lung
16
upper lobe of left lung
9
IMR-90
8
GM06990
8
GM19240
8
HAP-1
8
HL-60
8
NAMALWA cell
8
OCI-LY7
8
PC-9
7
CMK
7
GM12875
7
GM19238
7
GM19239
7
RPMI8226
7
WI38
7
type II pneumocyte
6
GM12891
6
GM12892
6
KBM-7
6
peripheral blood mononuclear cell
5
NB4
5
lung microvascular endothelial cell
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
NCI-H226 cell
4
NCI-H460 cell
4
type I pneumocyte
3
GM10847
3
GM12872
3
GM18526
3
GM18951
3
peripheral blood stem cell
2
NAMALWA
2
blood
1
GM12874
1
Karpas-422
1
NCI-H226
1
NCI-H460
1
endothelial cell of artery
1
lung neuroendocrine cell
1
whole blood
Organ
4
epithelium
4
lung
0
blood
Date released
3
November, 2021
1
April, 2020
Software used
2
macs
1
abc
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
organ_slims!
intestine
pancreas
Showing 4 of 4 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR767ZHU
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR436AKV
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE