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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
68
lung
62
A549
52
left lung
45
right lung
16
fibroblast of lung
16
upper lobe of left lung
14
prostate gland
12
epithelial cell of prostate
10
22Rv1
9
IMR-90
8
PC-9
7
LNCaP clone FGC
7
PC-3
7
RWPE1
7
WI38
7
type II pneumocyte
6
LNCAP
5
lung microvascular endothelial cell
4
C4-2B
4
NCI-H226 cell
4
NCI-H460 cell
4
RWPE2
4
VCaP cell
4
type I pneumocyte
1
NCI-H226
1
NCI-H460
1
VCaP
1
endothelial cell of artery
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
prostate
Organ
4
epithelium
4
lung
0
prostate gland
0
skeleton
Date released
3
November, 2021
1
April, 2020
Software used
2
macs
1
abc
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
organ_slims!
bone element
Showing 4 of 4 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR767ZHU
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR436AKV
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE