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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
9
skeletal muscle fiber
9
stomach smooth muscle
7
LHCN-M2
7
MG63
7
gastroesophageal sphincter
7
type I muscle cell
7
type II muscle cell
6
OCI-LY1
6
SJSA1
6
skeletal muscle cell
5
A673
5
L1-S8
5
OCI-LY3
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
HS-27A
4
HS-5
4
KMS-11
4
L1-S8R
4
NCI-H929
4
U2OS
4
bone tissue
4
femur
4
megakaryocyte
4
rectum smooth muscle tissue
4
stromal cell of bone marrow
3
arm bone
3
leg bone
3
mononuclear cell of bone marrow
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
aortic smooth muscle cell
1
bone cell
1
bone marrow cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
7
musculature of body
0
bone element
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
month_released!
April, 2019
organ_slims!
pituitary gland
Showing 7 of 7 results
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Download
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP