Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
2636
whole blood
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
52
liver
51
neural progenitor cell
50
CD8-positive, alpha-beta T cell
48
thymus
47
B cell
45
islet of Langerhans
45
right lung
43
hematopoietic multipotent progenitor cell
42
endothelial cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
38
hepatocyte
37
macrophage
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
33
fibroblast
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
29
adipocyte
28
regulatory T cell
26
MCF-7
26
natural killer cell
26
subcutaneous adipose tissue
25
pancreatic ductal cell
25
smooth muscle cell
25
tibial nerve
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
21
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
15
GM12878
15
ascending aorta
15
cerebellum
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
skeletal muscle satellite cell
11
CD4-positive, alpha-beta T cell
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
Organ
6
musculature of body
Date released
3
February, 2024
2
November, 2021
May, 2022
1
October, 2022
Software used
2
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
Project
4
AMP
2
ENCODE
Collection Tags
4
T2DKP
4
DGA
2
AMP
2
T2DKP
RFA
4
AMP2
2
ENCODE3
month_released!
May, 2022
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP