Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
90
heart
67
muscle of arm
58
muscle of leg
54
muscle of back
34
heart left ventricle
21
coronary artery
20
psoas muscle
19
heart right ventricle
19
right atrium auricular region
18
gastrocnemius medialis
17
fibroblast of cardiac tissue
17
muscle of trunk
16
skeletal muscle tissue
13
skeletal muscle satellite cell
12
left cardiac atrium
11
esophagus muscularis mucosa
9
skeletal muscle fiber
9
stomach smooth muscle
8
GM12864
8
GM12865
8
MM.1S
8
right cardiac atrium
7
LHCN-M2
7
gastroesophageal sphincter
7
smooth muscle cell of the coronary artery
7
type I muscle cell
7
type II muscle cell
6
GM10248
6
GM10266
6
skeletal muscle cell
5
A673
5
SJCRH30
5
endocardial cell
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
DND-41
4
KOPT-K1
4
Loucy
4
cardiac fibroblast
4
rectum smooth muscle tissue
3
GM13976
3
GM13977
3
GM20000
2
hindlimb muscle
2
muscle of leg
2
GM12866
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
endothelial cell of coronary artery
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
2
ventricular cardiac muscle cell
1
GM08714
1
GM12801
1
SU-DHL-2
1
aortic smooth muscle cell
1
aortic valve
1
cardiac atrium fibroblast
1
cardiac ventricle
1
cardiac ventricle fibroblast
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
fetal heart
1
hindlimb muscle
1
mitral valve
1
pulmonary valve
1
rectal smooth muscle tissue
1
smooth muscle tissue
1
tricuspid valve
Organ
7
musculature of body
0
heart
0
lymph node
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP