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Clear Filters
Annotation type
  • 4accessible chromatin
  • 2target gene predictions
  • 1variant allelic effects
Annotation Category
  • 4cis-regulatory elements
  • 2Target gene links
  • 1Genetic variant effects
Annotation type Category
  • 5snATAC-seq
  • 2ATAC-seq
Available data
  • 7bed bed3+
  • 4bigWig
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
  • 5GRCh38
Organism
  • 7Homo sapiens
Biosample type
  • 7primary cell
Biosample term
  • 82lung
  • 76A549
  • 67left lung
  • 56right lung
  • 23upper lobe of left lung
  • 18fibroblast of lung
  • 11IMR-90
  • 10PC-9
  • 10progenitor cell
  • 9WI38
  • 7H9
  • 7lung microvascular endothelial cell
  • 7type II pneumocyte
  • 4NCI-H226 cell
  • 4NCI-H460 cell
  • 4fibroblast
  • 4lung multiciliated epithelial cell
  • 4smooth muscle cell
  • 4type I pneumocyte
  • 3lower lobe of left lung
  • 2H7
  • 2NCI-H226
  • 2NCI-H460
  • 2bronchial epithelial cell
  • 2endothelial cell of lymphatic vessel
  • 2endothelial cell of vascular tree
  • 2macrophage
  • 2megakaryocyte
  • 2mesothelial cell
  • 2pericyte
  • 2pulmonary neuroendocrine cell
  • 1Calu3
  • 1H54
  • 1endothelial cell of artery
  • 1fibroblast of pulmonary artery
  • 1lower lobe of right lung
  • 1lung neuroendocrine cell
  • 1pulmonary artery endothelial cell
  • 1upper lobe of right lung
Organ
  • 7epithelium
  • 7lung
Date released
  • 5November, 2021
  • 1April, 2020
  • 1February, 2024
Software used
  • 3macs
  • 2abc
  • 1deltasvm
Lab
  • 6Bing Ren, UCSD
  • 1Xin Sun, UCSD
Project
  • 5ENCODE
  • 1AMP
  • 1LungMap
Collection Tags
  • 5AMP
  • 5T2DKP
  • 1DGA
RFA
  • 5ENCODE3
  • 1AMP
  • 1LungMap2

Showing 7 of 7 results

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  • FileSet

    DSR731YZV

    released

    Annotation file set: ATAC-seq peaks in AT2 cells from lung snATAC-seq
    Lab: Xin Sun, UCSD
    Project: LungMap
  • FileSet

    DSR588HKS

    released

    Annotation file set: Target gene predictions of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR775ZRO

    released

    Annotation file set: Target gene predictions of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR314DTK

    released

    Annotation file set: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR413LRE

    released

    Annotation file set: Accessible chromatin annotation of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR002AWQ

    released

    Annotation file set: Accessible chromatin annotation of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR141FAK

    released

    Annotation file set: Variant allelic effects annotation of Pulmonary alveolar type II cells from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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