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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
129
monocyte
87
heart
83
stomach
80
kidney
71
brain
68
lung
67
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
50
CD8-positive, alpha-beta T cell
47
thymus
46
liver
45
B cell
44
endothelial cell
44
islet of Langerhans
44
right lung
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
39
renal pelvis
37
hepatocyte
37
retina
36
left kidney
35
fibroblast
34
macrophage
33
heart left ventricle
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
adipocyte
27
smooth muscle cell
26
regulatory T cell
25
MCF-7
25
natural killer cell
24
pancreatic ductal cell
24
pericyte cell
23
EndoC_BH1
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
body of pancreas
22
epithelial cell of proximal tubule
22
sigmoid colon
22
trophoblast cell
21
T cell
21
T-helper 17 cell
21
foreskin keratinocyte
21
keratinocyte
21
tibial nerve
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
pancreas
20
pigmented layer of retina
19
coronary artery
19
glomerular endothelial cell
19
heart right ventricle
19
ovary
19
psoas muscle
19
subcutaneous adipose tissue
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
mesenchymal stem cell
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
pancreatic acinar cell
17
pancreatic beta cell
17
substantia nigra
17
thyroid gland
17
transverse colon
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
right atrium auricular region
16
testis
16
tibial artery
15
CD4-positive, alpha-beta T cell
15
HepG2
15
fibroblast of cardiac tissue
15
neutrophil
15
omental fat pad
15
osteoblast
15
pancreatic alpha cell
15
retinal pigment epithelial cell
15
skeletal muscle tissue
15
upper lobe of left lung
14
GM12878
14
H9
14
ascending aorta
14
endocrine pancreas
14
mammary gland epithelial cell
14
skeletal muscle myoblast
13
aorta
13
excitatory neuron
13
neurosphere
13
pancreatic delta cell
13
prostate gland
12
Peyer's patch
12
bronchial epithelial cell
12
cerebellum
12
fibroblast of dermis
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
skeletal muscle satellite cell
11
erythroblast
11
frontal cortex
11
left cardiac atrium
11
left renal pelvis
11
lymphoblastoid cell line
11
mammary epithelial cell
11
neuronal stem cell
11
putamen
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Ammon's horn
10
epithelial cell of prostate
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
liposarcoma
9
parathyroid adenoma
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
glomerular visceral epithelial cell
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
lower leg skin
8
mast cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
bam
month_released!
February, 2020
June, 2020
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP