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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
47
liver
46
H1-hESC
45
B cell
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
35
fibroblast
35
spinal cord
34
islet of Langerhans
33
heart left ventricle
33
macrophage
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
adipose tissue
28
adipocyte
26
MCF-7
26
smooth muscle cell
24
natural killer cell
24
pericyte cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pancreas
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
psoas muscle
19
HFFc6
19
mesenchymal stem cell
19
ovary
19
tibial nerve
18
body of pancreas
18
gastrocnemius medialis
18
heart right ventricle
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
16
GM12878
16
H9
16
caudate nucleus
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
skeletal muscle myoblast
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
astrocyte
15
coronary artery
15
neutrophil
15
skeletal muscle tissue
14
T-helper 17 cell
14
T-helper 2 cell
14
endocrine pancreas
14
osteoblast
14
prostate gland
13
Peyer's patch
13
neurosphere
13
right atrium auricular region
13
skeletal muscle satellite cell
13
tibial artery
12
aorta
12
excitatory neuron
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
neuronal stem cell
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
substantia nigra
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
gastric cancer cell
10
hepatic stellate cell
10
left cardiac atrium
10
lymphocyte
10
right renal cortex interstitium
10
subcutaneous adipose tissue
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
omental fat pad
9
parathyroid adenoma
9
putamen
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HT-29
8
NAMALWA cell
8
ascending aorta
8
cerebellum
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
frontal cortex
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
mesendoderm
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
HL-60
7
Jurkat
7
KARPAS-422 cell
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mast cell
7
mature neutrophil
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES8
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
tsv
organ_slims!
epithelium
skin of body
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP