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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
0
bam
0
bed bed9
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
110
monocyte
87
heart
84
stomach
74
kidney
70
brain
67
muscle of arm
66
lung
64
HeLa-S3
62
A549
62
small intestine
60
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
thymus
47
CD8-positive, alpha-beta T cell
46
H1-hESC
45
right lung
43
neural progenitor cell
42
B cell
42
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
liver
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
32
spleen
31
CD14-positive monocyte
31
endothelial cell
30
fibroblast
26
MCF-7
26
adipose tissue
24
adipocyte
24
hepatocyte
23
macrophage
23
sigmoid colon
23
smooth muscle cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
pericyte cell
21
T cell
21
keratinocyte
21
pancreas
20
breast cancer cell
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
psoas muscle
19
foreskin fibroblast
19
regulatory T cell
18
HFFc6
18
body of pancreas
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
ovary
18
tibial nerve
17
HepG2
17
cardiac muscle cell
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
GM12878
16
chorionic villus
16
embryonic stem cell
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
islet of Langerhans
16
retinal pigment epithelial cell
16
upper lobe of left lung
15
H9
15
astrocyte
15
layer of hippocampus
15
mammary gland epithelial cell
15
testis
14
T-helper 1 cell
14
caudate nucleus
14
endocrine pancreas
14
osteoblast
14
pancreatic ductal cell
14
skeletal muscle myoblast
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
neurosphere
13
skeletal muscle tissue
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
excitatory neuron
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
12
right atrium auricular region
11
breast epithelium
11
epithelial cell of prostate
11
left renal cortex interstitium
11
left renal pelvis
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
skin fibroblast
10
substantia nigra
10
trophoblast
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
kidney tubule cell
9
liposarcoma
9
neutrophil
9
omental fat pad
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM19240
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cerebellum
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
frontal cortex
7
hepatic stellate cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12875
6
GM12892
6
GM18507
6
GM19238
6
GM19239
6
GM23248
6
HAP-1
6
HCT116
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
organ_slims!
vasculature
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP