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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
128
monocyte
87
heart
86
stomach
80
kidney
72
brain
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
47
liver
47
thymus
45
right lung
43
hematopoietic multipotent progenitor cell
41
B cell
41
endothelial cell
40
K562
40
right kidney
39
renal cortex interstitium
39
renal pelvis
39
retina
36
hepatocyte
36
left kidney
35
spinal cord
34
islet of Langerhans
34
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
heart left ventricle
31
CD14-positive monocyte
31
macrophage
30
adipose tissue
26
MCF-7
26
regulatory T cell
25
smooth muscle cell
23
body of pancreas
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
adipocyte
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
natural killer cell
22
pericyte cell
22
tibial nerve
21
T-helper 1 cell
21
pancreatic ductal cell
20
EndoC_BH1
20
breast cancer cell
20
caudate nucleus
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
19
mesenchymal stem cell
19
pancreas
19
subcutaneous adipose tissue
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
gastrocnemius medialis
18
heart right ventricle
18
thyroid gland
18
transverse colon
17
astrocyte
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
right atrium auricular region
17
substantia nigra
17
testis
16
HepG2
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
fibroblast of cardiac tissue
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
cerebellum
15
fibroblast of lung
15
layer of hippocampus
15
mammary gland epithelial cell
15
tibial artery
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
neutrophil
14
pancreatic acinar cell
14
pancreatic beta cell
14
prostate gland
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
pancreatic alpha cell
13
putamen
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
12
Ammon's horn
12
fibroblast of dermis
12
lymphoblastoid cell line
12
neuroblastoma cell
12
temporal lobe
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic delta cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skin fibroblast
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
hepatic stellate cell
9
induced pluripotent stem cell
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal cortex interstitium
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
August, 2017
March, 2023
May, 2020
organ_slims!
nose
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP