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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
89
heart
86
stomach
81
kidney
73
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
50
neural progenitor cell
47
B cell
47
liver
47
thymus
45
right lung
44
endothelial cell
43
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
fibroblast
35
macrophage
35
spinal cord
34
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
29
adipocyte
28
regulatory T cell
27
smooth muscle cell
26
MCF-7
26
natural killer cell
25
pancreatic ductal cell
24
pericyte cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T cell
22
foreskin keratinocyte
22
sigmoid colon
22
tibial nerve
21
T-helper 17 cell
21
body of pancreas
21
glomerular endothelial cell
21
keratinocyte
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
19
caudate nucleus
19
foreskin fibroblast
19
ovary
19
pancreas
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic beta cell
18
subcutaneous adipose tissue
18
thyroid gland
18
transverse colon
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
coronary artery
17
embryonic stem cell
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
right atrium auricular region
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
HepG2
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
15
substantia nigra
15
tibial artery
14
H9
14
endocrine pancreas
14
prostate gland
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
omental fat pad
11
ascending aorta
11
breast epithelium
11
cerebellum
11
epithelial cell of prostate
11
erythroblast
11
frontal cortex
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
aorta
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
parathyroid adenoma
9
putamen
9
tongue
9
trophoblast
9
vagina
8
Ammon's horn
8
GM12865
8
HEK293
8
IMR-90
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BJ cell
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
March, 2020
organ_slims!
bodily fluid
spleen
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP