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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
eQTL
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
6
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
1
bed bed9
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
100
monocyte
85
stomach
84
heart
71
brain
67
lung
66
muscle of arm
64
HeLa-S3
64
kidney
63
small intestine
62
A549
61
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
thymus
46
H1-hESC
45
liver
45
right lung
44
CD8-positive, alpha-beta T cell
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
39
B cell
39
renal cortex interstitium
39
renal pelvis
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spleen
30
heart left ventricle
29
islet of Langerhans
28
adipose tissue
26
MCF-7
26
adipocyte
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
hepatocyte
22
macrophage
22
retina
21
endothelial cell
21
natural killer cell
20
breast cancer cell
20
fibroblast
20
mononuclear cell
20
psoas muscle
19
foreskin fibroblast
19
keratinocyte
19
ovary
18
HFFc6
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreas
18
smooth muscle cell
18
thyroid gland
18
transverse colon
17
T cell
17
embryonic stem cell
17
muscle of trunk
17
regulatory T cell
17
tibial nerve
16
GM12878
16
HepG2
16
chorionic villus
16
fibroblast of lung
16
heart right ventricle
16
layer of hippocampus
16
testis
16
upper lobe of left lung
15
H9
15
caudate nucleus
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
CD4-positive, alpha-beta T cell
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
prostate gland
13
EndoC_BH1
13
Peyer's patch
13
bronchial epithelial cell
13
neurosphere
12
T-helper 1 cell
12
T-helper 17 cell
12
aorta
12
fibroblast of dermis
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
osteoblast
11
T-helper 2 cell
11
breast epithelium
11
coronary artery
11
epithelial cell of prostate
11
pericyte cell
11
retinal pigment epithelial cell
11
substantia nigra
11
temporal lobe
11
tibial artery
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left renal cortex interstitium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
right atrium auricular region
10
right renal cortex interstitium
10
trophoblast
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
HT-29
8
IMR-90
8
NAMALWA cell
8
cerebellum
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pancreatic ductal cell
8
pituitary stalk
8
putamen
8
subcutaneous adipose tissue
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM19240
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
ascending aorta
7
astrocyte
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
frontal cortex
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
stomach smooth muscle
7
uterus
6
Ammon's horn
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
Organ
8
uterus
Life stage
5
adult
Date released
3
September, 2022
2
February, 2021
1
January, 2022
1
June, 2020
1
May, 2021
Software used
2
encode-ccres
2
r
1
abc
1
chromhmm
1
macs
1
qTLtools
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
lymphoblastoid cell line
files.file_type!
bigWig
tsv
Showing 8 of 8 results
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Download
FileSet
DSR903VBR
released
Annotation file set
: Candidate regulatory elements for BSS01884 uterus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR090SSF
released
Annotation file set
: Target gene predictions for BSS01884 uterus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR590GOS
released
Annotation file set
: Chromatin states for BSS01884 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR572QKZ
released
Annotation file set
: uterus eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR196WYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE uterus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR703DFT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE uterus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR254PVY
released
Annotation file set
: enhancer-gene predicton of uterus-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR373YCF
released
Annotation file set
: Accessible chromatin annotation for Uterus Uterus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP