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Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
979
histone modification
978
histone
495
narrow histone mark
482
broad histone mark
260
control
153
transcription factor
49
RNA binding protein
6
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Biosample type
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
3
liver
2
connective tissue
1
epithelium
Life stage
3
unknown
1
adult
1
child
1
embryonic
Available data
6
bam
6
bed narrowPeak
6
bigWig
6
fastq
4
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Platform
2
HiSeq 1500
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer
1
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
2
50
2
70
1
36
1
76
Library made from
6
DNA
Date released
3
August, 2017
3
December, 2017
Lab
6
AMP-T2D consortium
Replication type
4
isogenic
2
unreplicated
Audit category:
2
inconsistent control
Audit category:
2
inconsistent control read length
biosample_type!
cell line
Showing 6 of 6 results
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Experiment
TSTSR055572
released
Audit error
1
ChIP-seq
of liver
Homo sapiens
liver female child (4 years)
Target:
REST
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR039304
released
Audit error
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
REST
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR113935
released
ChIP-seq
of hepatocyte
Homo sapiens
hepatocyte
Target:
EZH2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR105625
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
BRD4
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR400538
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
BRD4
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR204469
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
EZH2
Lab:
AMP-T2D consortium
Project:
AMP