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Schema
Clear Filters
Assay category
1715
Transcription
1673
DNA binding
782
DNA accessibility
70
DNA methylation
22
3D chromatin structure
1
DNA sequencing
Assay
1673
ChIP-seq
1347
total RNA-seq
483
ATAC-seq
364
single cell RNA-seq
211
DNase-seq
87
RNA microarray
85
snATAC-seq
63
WGBS
52
pCHi-C
22
Hi-C
10
MeRIP-seq
6
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3791
AMP
324
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
RFA
3609
AMP
324
HPAP
244
T1D
182
AMP2
47
KPMP
19
LungMap2
4
community
1
ITG
Experiment status
4429
released
1
archived
Genome assembly (visualization)
2825
hg19
2784
GRCh38
1
hg18
Organism
4414
Homo sapiens
Target of assay
905
histone modification
904
histone
465
transcription factor
459
narrow histone mark
445
broad histone mark
303
control
103
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Biosample type
2701
tissue
1057
primary cell
662
cell line
in vitro differentiated cells
10
stem cell
Organ
937
pancreas
766
liver
569
connective tissue
478
adipose tissue
440
epithelium
367
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
87
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2842
adult
636
unknown
538
child
360
embryonic
50
newborn
Available data
3019
bam
2825
bigWig
1678
bed narrowPeak
1405
tsv
1211
fastq
1023
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
245
bed bed3+
158
txt
112
zippedFastqFolder
64
xls
19
hic
16
bedpe bed3+
13
bed bedMethyl
13
bigBed bedMethyl
8
csv
7
bed bed3
4
tar
3
cool
1
bedpe
1
hdf5
1
tagAlign bed3+
1
tbi
1
vcf
Platform
545
Illumina HiSeq 2000
171
Illumina NovaSeq 6000
151
Illumina HiSeq 4000
136
Illumina HiSeq 2500
109
Illumina Genome Analyzer IIx
75
Illumina Genome Analyzer
60
Illumina NextSeq 500
38
HiSeq HighOutput V4
19
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
7
MiSeq
5
Illumina HiSeq X Ten
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
787
single-ended
540
paired-ended
61
unknown
Read length (nt)
220
36
214
100
205
101
188
50
158
76
86
51
61
8
59
75
47
40
33
90
27
43
23
98
22
49
20
16
20
28
15
26
14
27
14
102
11
25
10
91
8
41
7
24
7
33
6
200
5
32
5
35
5
151
4
44
4
61
4
94
2
97
2
150
1
20
1
30
1
72
1
99
1
105
1
110
1
125
1
140
1
147
Mapped read length (nt)
5
50
4
36
2
51
Library insert size (nt)
112
>200
41
>100
1
150-250
1
>150
Library made from
2654
DNA
1760
RNA
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
1
July, 2025
Lab
3464
AMP-T2D consortium
324
Klaus Kaestner, Upenn
296
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Replication type
3194
unreplicated
727
isogenic
509
anisogenic
Audit category:
236
inconsistent ontology term
40
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
Showing 5 of 4430 results
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Experiment
DSR331UWQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (52 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR014SRD
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (35 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR763MHD
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (48 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR589CSM
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (40 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR647TAR
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (31 year)
Lab:
KPMP
Project:
KPMP