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Annotation type
  • 4caQTL
  • 1differential activity
  • 1variant allelic effects
Annotation Category
  • 5Genetic variant effects
  • 1Gene expression levels
Annotation type Category
  • 4snATAC-seq
  • 1RNA-seq
  • 1SNP-SELEX
Available data
  • 5bed bed3+
  • 1tsv
File set status
  • 6released
Genome assembly (visualization)
  • 4GRCh38
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  • 5Homo sapiens
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  • tissue
  • 4primary cell
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  • 1EndoC_BH1
  • 1endothelial cell
  • 1fibroblast of the aortic adventitia
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  • 2blood vessel
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Date released
  • 1949February, 2021
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  • 1July, 2020
  • 1June, 2021
Software used
  • 4rasqual
  • 1betacells_cytokines_t1d
Lab
  • 5AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Project
  • 5AMP
  • 1T1D
Collection Tags
  • 5CMDGA
  • 1AMP
  • 1DGA
RFA
  • 5AMP
  • 1T1D
biosample_type!
  • tissue

Showing 6 of 6 results

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  • FileSet

    DSR309JFA

    released

    Annotation file set: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siCALCOCO2 mediated knockdown
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR375DYB

    released

    Annotation file set: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR077AGV

    released

    Annotation file set: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR868SOF

    released

    Annotation file set: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR702NJX

    released

    Annotation file set: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR976GBT

    released

    Annotation file set: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
    Lab: Kyle Gaulton, UCSD
    Project: T1D
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