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Annotation type
1
representative DNase hypersensitivity sites
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
Available data
1
tsv
File set status
1
released
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
1
myocyte
Date released
1
February, 2021
Software used
2232
macs
1354
r
524
chromhmm
360
encode-ccres
222
abc
117
deseq2
88
deltasvm
60
qTLtools
32
cicero
25
chicago
25
seurat
18
samtools
15
limix
12
deeptools
12
umitools
9
rasqual
9
salmon
6
hiccups
6
nospecificsoft_customcode
5
eigenmt
3
minfi
3
sqtlseeker
2
matrix-eQTL
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
cisgenome
1
e-range
1
pepatac
1
unknown
Lab
1
AMP-T2D consortium
Project
1
AMP
Collection Tags
1
ENCODE
RFA
1
AMP
biosample_type!
tissue
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FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP