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Annotation type
  • 6target gene predictions
Annotation Category
  • 6Target gene links
Annotation type Category
  • 6HiC
Available data
  • 6bed bed3+
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
Organism
  • 6Homo sapiens
Biosample type
  • tissue
  • 4in vitro differentiated cells
  • 1cell line
  • 1primary cell
Biosample term
  • 2cardiomyocytes (cardiac muscle cell)
  • 1EndoC_BH1
  • 1cardiac precursors (cardiac muscle cell)
  • 1endothelial cell of umbilical vein
  • 1lymphocyte of B lineage (iPSC)
Organ
  • 2epithelium
  • 1blood vessel
  • 1pancreas
  • 1vasculature
  • 1vein
Life stage
  • 2adult
Date released
  • 6March, 2020
Software used
  • 2232macs
  • 1354r
  • 524chromhmm
  • 360encode-ccres
  • 222abc
  • 117deseq2
  • 88deltasvm
  • 60qTLtools
  • 32cicero
  • 25chicago
  • 25seurat
  • 18samtools
  • 15limix
  • 12deeptools
  • 12umitools
  • 9rasqual
  • 9salmon
  • 6hiccups
  • 6nospecificsoft_customcode
  • 5eigenmt
  • 3minfi
  • 3sqtlseeker
  • 2matrix-eQTL
  • 2mpraflow
  • 1altius-index
  • 1bedops
  • 1betacells_cytokines_t1d
  • 1cisgenome
  • 1e-range
  • 1pepatac
  • 1unknown
Lab
  • 6AMP-T2D consortium
Project
  • 6AMP
Collection Tags
  • 6DGA
  • 1 T2DKP
RFA
  • 6AMP
biosample_type!
  • tissue

Showing 6 of 6 results

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  • FileSet

    DSR360EAO

    released

    Annotation file set: A target gene prediction annotation in lymphocyte of B lineage (iPSC) of DSR763JZB Hi-C E-MTAB-6014
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR049KAF

    released

    Annotation file set: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR373FUA

    released

    Annotation file set: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR804DQM

    released

    Annotation file set: A target gene prediction annotation in cardiomyocytes (cardiac muscle cell) of DSR722REK Hi-C E-MTAB-6014
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR453PFX

    released

    Annotation file set: A target gene prediction annotation in cardiomyocytes (cardiac muscle cell) of DSR235SPD Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR215MEP

    released

    Annotation file set: A target gene prediction annotation in cardiac precursors (cardiac muscle cell) of DSR464RKE Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
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