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Clear Filters
Annotation type
  • 2caQTL
Annotation Category
  • 2Genetic variant effects
Annotation type Category
  • 2ATAC-seq
Available data
  • 2bed bed3+
File set status
  • 2released
Genome assembly (visualization)
  • 2GRCh38
Organism
  • 2Homo sapiens
Biosample type
  • tissue
  • 2primary cell
Biosample term
  • 2CD4-positive helper T cell
Date released
  • 2October, 2022
Software used
  • 2232macs
  • 1354r
  • 524chromhmm
  • 360encode-ccres
  • 222abc
  • 117deseq2
  • 88deltasvm
  • 60qTLtools
  • 32cicero
  • 25chicago
  • 25seurat
  • 18samtools
  • 15limix
  • 12deeptools
  • 12umitools
  • 9rasqual
  • 9salmon
  • 6hiccups
  • 6nospecificsoft_customcode
  • 5eigenmt
  • 3minfi
  • 3sqtlseeker
  • 2matrix-eQTL
  • 2mpraflow
  • 1altius-index
  • 1bedops
  • 1betacells_cytokines_t1d
  • 1cisgenome
  • 1e-range
  • 1pepatac
  • 1unknown
Lab
  • 2Stephen S. Rich Lab @UVA
Project
  • 2T1D
Collection Tags
  • 2T1D
RFA
  • 2T1D
biosample_type!
  • tissue

Showing 2 of 2 results

table-tab-iconmatrix-icon

  • FileSet

    DSR077VUE

    released

    Annotation file set: full cis-caQTL stats for 10 T1D-associated regions
    Lab: Stephen S. Rich Lab @UVA
    Project: T1D

  • FileSet

    DSR578KNM

    released

    Annotation file set: nominally significant results from cis-caQTL scan
    Lab: Stephen S. Rich Lab @UVA
    Project: T1D
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