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Annotation type
3
sQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Life stage
3
adult
Date released
3
May, 2021
Software used
2232
macs
1354
r
524
chromhmm
360
encode-ccres
222
abc
117
deseq2
88
deltasvm
60
qTLtools
32
cicero
25
chicago
25
seurat
18
samtools
15
limix
12
deeptools
12
umitools
9
rasqual
9
salmon
6
hiccups
6
nospecificsoft_customcode
5
eigenmt
3
minfi
3
sqtlseeker
2
matrix-eQTL
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
cisgenome
1
e-range
1
pepatac
1
unknown
Lab
3
AMP-T2D consortium
Project
3
AMP
Collection Tags
3
BLUEPRINT
3
T1D
RFA
3
AMP
biosample_type!
tissue
Showing 3 of 3 results
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FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP