Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Annotation type
  • 2binding sites
  • 2candidate regulatory elements
  • 2target gene predictions
  • 1accessible chromatin
  • 1chromatin state
Annotation Category
  • 6cis-regulatory elements
  • 2Target gene links
Annotation type Category
  • 6ChIP-seq
  • 5DNase-seq
Available data
  • 7bed bed3+
  • 1bed bed9
File set status
  • 8released
Genome assembly (visualization)
  • 7hg19
  • 2GRCh38
Organism
  • 8Homo sapiens
Biosample type
  • 22tissue
  • 8cell line
  • 1primary cell
Biosample term
  • 6NT2-D1 cell
  • 2NT2/D1
Organ
  • 247blood
  • 205bodily fluid
  • 129lung
  • 127embryo
  • 90brain
  • 86skin of body
  • 73uterus
  • 63bone element
  • 62lymph node
  • 60prostate gland
  • 58intestine
  • 58large intestine
  • 49mammary gland
  • 48kidney
  • 43epithelium
  • 37pancreas
  • 32liver
  • 31connective tissue
  • 17musculature of body
  • 15penis
  • 12eye
  • 11vasculature
  • 10pituitary gland
  • 9heart
  • 8gonad
  • 8testis
  • 7limb
  • 6blood vessel
  • 6lymphoid tissue
  • 4artery
  • 4extraembryonic component
  • 4mouth
  • 4placenta
  • 3adipose tissue
  • 3spinal cord
  • 2lymphatic vessel
  • 2urinary bladder
  • 2vein
  • 1muscle organ
Life stage
  • 4unknown
Date released
  • 3September, 2022
  • 2February, 2021
  • 1July, 2026
  • 1June, 2020
  • 1October, 2022
Software used
  • 2chromhmm
  • 2macs
  • 2r
  • 1encode-ccres
Lab
  • 8AMP-T2D consortium
Project
  • 8AMP
Collection Tags
  • 3EpiMap
  • 2ChIP-Atlas
  • 2ENCODE
  • 1ENCODE-rE2G
RFA
  • 8AMP

Showing 8 of 8 results

table-tab-iconmatrix-icon

  • FileSet

    DSR773380

    released

    Annotation file set: Target gene predictions for NT2/D1 (EFO:0005236) derived from ENCODE-rE2G (ENCSR210SPK).
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR209NBR

    released

    Annotation file set: Binding sites annotation for NT2-D1 cell (NT2-D1) for GOLDENPATH ENCODE DCC
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR464YWC

    released

    Annotation file set: Candidate regulatory elements for BSS01386 NT2-D1 cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR598KKZ

    released

    Annotation file set: Target gene predictions for BSS01386 NT2-D1 cell from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR549AED

    released

    Annotation file set: Chromatin states for BSS01386 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR260HPP

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE NT2/D1
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR556ACO

    released

    Annotation file set: Binding sites annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR815ZSB

    released

    Annotation file set: Accessible chromatin annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego