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Schema
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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
80
primary cell
48
tissue
6
in vitro differentiated cells
2
cell line
Biosample term
1
EndoC_BH1
1
glomerular visceral epithelial cell
Organ
2
epithelium
1
kidney
1
pancreas
Date released
2
May, 2020
Software used
1321
macs
379
r
259
chromhmm
148
encode-ccres
48
abc
10
qTLtools
6
deseq2
6
samtools
2
deltasvm
2
mpraflow
2
nospecificsoft_customcode
1
chicago
1
cisgenome
1
e-range
1
hiccups
Lab
2
AMP-T2D consortium
Project
2
AMP
Collection Tags
2
DGA
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372RJW
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney podocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP