Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Annotation type
  • 6accessible chromatin
Annotation Category
  • 6cis-regulatory elements
Annotation type Category
  • 6ATAC-seq
Available data
  • 6bed bed3+
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
Organism
  • 6Homo sapiens
Biosample type
  • 111primary cell
  • 16tissue
  • 6cell line
Biosample term
  • 6EndoC_BH1
Organ
  • 6epithelium
  • 6pancreas
Date released
  • 6May, 2021
Software used
  • 1321macs
  • 379r
  • 259chromhmm
  • 148encode-ccres
  • 48abc
  • 10qTLtools
  • 6deseq2
  • 6samtools
  • 2deltasvm
  • 2mpraflow
  • 2nospecificsoft_customcode
  • 1chicago
  • 1cisgenome
  • 1e-range
  • 1hiccups
Lab
  • 6AMP-T2D consortium
Project
  • 6AMP
Collection Tags
  • 6 T2DKP
  • 6T1D
RFA
  • 6AMP

Showing 6 of 6 results

table-tab-iconmatrix-icon

  • FileSet

    DSR313PSZ

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 2 h(fast response)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR521RFR

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 2 h(fast response)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR062QKS

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 2 h(fast response)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR955RJH

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 24 h(late response)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR195HKC

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 24 h(late response)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR460ECL

    released

    Annotation file set: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 24 h(late response)
    Lab: AMP-T2D consortium
    Project: AMP
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego