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Schema
Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
4
Hi-C
3
pCHi-C
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
4
primary cell
2
cell line
Organ
1
adipose tissue
1
connective tissue
Life stage
4
adult
3
unknown
Available data
252
bam
223
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
69
Library made from
7
DNA
Date released
4
March, 2020
2
October, 2019
1
August, 2018
Lab
7
AMP-T2D consortium
Replication type
6
isogenic
1
unreplicated
Audit category:
6
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2018
Showing 7 of 7 results
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Experiment
DSR763JZB
released
Audit error
1
Hi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR535XNG
released
Audit error
1
pCHi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR722REK
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR382TEU
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP