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Clear Filters
Annotation type
  • 6variant allelic effects
  • 1target gene predictions
Annotation Category
  • 6Genetic variant effects
  • 1Target gene links
Annotation type Category
  • 5ATAC-seq
  • 1DNase-seq
  • 1pCHi-C
Available data
  • 7bed bed3+
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
Organism
  • 7Homo sapiens
Biosample type
  • 86primary cell
  • 60tissue
  • 7in vitro differentiated cells
  • 2cell line
Biosample term
  • 2Pancreatic progenitors (progenitor cell of endocrine pancreas)
  • 1Adipose SGBS cell line (adipocyte)
  • 1Preadipose SGBS cell line (adipocyte)
  • 1cardiac precursors (cardiac muscle cell)
  • 1cardiomyocytes (cardiac muscle cell)
  • 1lymphocyte of B lineage (iPSC)
Organ
  • 2connective tissue
Life stage
  • 1adult
Date released
  • 189February, 2021
  • 105September, 2022
  • 39May, 2021
  • 32February, 2024
  • 31August, 2021
  • 21June, 2020
  • 18November, 2022
  • 10March, 2020
  • 7May, 2020
  • 4August, 2017
  • 4September, 2023
  • 3January, 2020
  • 3January, 2022
  • 2November, 2019
  • 2October, 2019
Software used
  • 6deltasvm
  • 1chicago
Lab
  • 7AMP-T2D consortium
Project
  • 7AMP
Collection Tags
  • 7DGA
RFA
  • 7AMP

Showing 7 of 7 results

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  • FileSet

    DSR980SZR

    released

    Annotation file set: Genetic variants with deltaSVM predictions in preadipose SGBS ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR181VXG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR008HPH

    released

    Annotation file set: Genetic variants with deltaSVM prediction in cardiomyocyte ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR696ULI

    released

    Annotation file set: Genetic variants with deltaSVM predictions in cardiac precursor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR835LQY

    released

    Annotation file set: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR125CCG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in adipose SGBS ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR991ZOB

    released

    Annotation file set: A target gene prediction annotation in lymphocyte of B lineage (iPSC) of DSR535XNG pCHi-C E-MTAB-6014
    Lab: AMP-T2D consortium
    Project: AMP
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