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Schema
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Annotation type
2
target gene predictions
1
accessible chromatin
1
gene expression
Annotation Category
2
Target gene links
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
Capture-C
1
ATAC-seq
1
RNA-seq
Available data
3
bed bed3+
1
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
350
tissue
77
cell line
35
primary cell
4
in vitro differentiated cells
1
stem cell
Biosample term
2
hippocampal neuron
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
Organ
50
connective tissue
30
embryo
26
epithelium
9
skin of body
7
liver
6
eye
6
penis
5
extraembryonic component
4
brain
4
nose
3
mammary gland
3
pancreas
2
lymphatic vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
heart
1
kidney
Life stage
1
unknown
Date released
2
September, 2023
1
February, 2024
1
January, 2022
Software used
2
chicago
1
macs
1
r
Lab
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Project
4
AMP
Collection Tags
4
AMP
RFA
2
AMP
2
AMP2
Showing 4 of 4 results
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FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR416XCR
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Neuron (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR721DBF
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-derived hippocampal DG-like neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317RKZ
released
Annotation file set
: Gene expression annotation of RNA-seq_iPSC-derived hippocampal DG-like neurons
Lab:
AMP-T2D consortium
Project:
AMP