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Clear Filters
Annotation type
  • 6variant allelic effects
Annotation Category
  • 6Genetic variant effects
Annotation type Category
  • 5ATAC-seq
  • 1DNase-seq
Available data
  • 6bed bed3+
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
Organism
  • 6Homo sapiens
Biosample type
  • 80primary cell
  • 48tissue
  • 6in vitro differentiated cells
  • 2cell line
Biosample term
  • 2Pancreatic progenitors (progenitor cell of endocrine pancreas)
  • 1Adipose SGBS cell line (adipocyte)
  • 1Preadipose SGBS cell line (adipocyte)
  • 1cardiac precursors (cardiac muscle cell)
  • 1cardiomyocytes (cardiac muscle cell)
Organ
  • 2connective tissue
Date released
  • 6May, 2020
Software used
  • 201macs
  • 144r
  • 44chromhmm
  • 44encode-ccres
  • 17abc
  • 7chicago
  • 6deltasvm
  • 4hiccups
  • 2nospecificsoft_customcode
  • 1altius-index
Lab
  • 6AMP-T2D consortium
Project
  • 6AMP
Collection Tags
  • 6DGA
RFA
  • 6AMP

Showing 6 of 6 results

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  • FileSet

    DSR980SZR

    released

    Annotation file set: Genetic variants with deltaSVM predictions in preadipose SGBS ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR181VXG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR008HPH

    released

    Annotation file set: Genetic variants with deltaSVM prediction in cardiomyocyte ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR696ULI

    released

    Annotation file set: Genetic variants with deltaSVM predictions in cardiac precursor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR835LQY

    released

    Annotation file set: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR125CCG

    released

    Annotation file set: Genetic variants with deltaSVM predictions in adipose SGBS ATAC-seq
    Lab: AMP-T2D consortium
    Project: AMP
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