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Assay category
2
DNA binding
1
DNA accessibility
Assay
2
ChIP-seq
1
DNase-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Target of assay
2
RNA binding protein
2
transcription factor
Biosample type
13
tissue
7
in vitro differentiated cells
3
cell line
3
primary cell
Organ
2
brain
2
epithelium
2
vasculature
1
blood vessel
Life stage
3
unknown
Available data
3
bam
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
Platform
218
Illumina NovaSeq 6000
115
Illumina HiSeq 2000
48
Illumina NextSeq 500
39
Illumina HiSeq 4000
38
HiSeq HighOutput V4
37
Illumina Genome Analyzer IIx
37
Illumina HiSeq 2500
8
Illumina Genome Analyzer
8
Illumina Genome Analyzer IIe
3
Illumina Genome Analyzer II
Run type
3
single-ended
1
paired-ended
Read length (nt)
3
36
1
101
Library made from
3
DNA
Date released
2
November, 2017
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Showing 3 of 3 results
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Experiment
TSTSR411985
released
ChIP-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR492951
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP