Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
3
ChIP-seq
1
pCHi-C
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
460
cell line
348
primary cell
329
tissue
163
in vitro differentiated cells
4
stem cell
Organ
1
connective tissue
Life stage
4
unknown
Available data
3
bam
3
bed bed3+
3
fastq
2
bed narrowPeak
2
bigWig
1
tsv
Platform
3
Illumina HiSeq 2500
Run type
3
single-ended
Read length (nt)
2
36
2
50
Library made from
4
DNA
Date released
3
December, 2017
1
March, 2020
Lab
4
AMP-T2D consortium
Replication type
unreplicated
3
isogenic
1
anisogenic
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
Mark McCarthy, Oxford
replication_type!
unreplicated
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
Experiment
DSR881MKA
released
Audit error
1
pCHi-C
of mesenchymal stem cell
Homo sapiens
mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR923383
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR015572
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR481230
released
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP