Search – Common Metabolic Diseases Genome Atlas

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Publication
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Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3' UTR of FAIM2
Sheridan H Littleton, Khanh B Trang, Christina M Volpe, et al.
Cell Genomics. 2024-05-08;
Data summary: Hi-C, RNA-seq, ATAC-seq, single-nucleus RNA-seq, and single-nucleus ATAC-seq data have been…
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241592
Data summary: Raw and processed Hi-C data GEO: GSE241592
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241050
Data summary: Raw and processed RNA-seq data GEO: GSE241050
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241591
Data summary: Raw and processed ATAC-seq data GEO: GSE241591
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241594
Data summary: Raw and processed single-nucleus RNA-seq data GEO: GSE241594
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241593
Data summary: Raw and processed single-nucleus ATAC-seq data GEO: GSE241593;
Publication
released
Gene expression in African Americans, Puerto Ricans and Mexican Americans reveals ancestry-specific patterns of genetic architecture
Linda Kachuri, Angel C. Y. Mak, Donglei Hu, et al.
Nat Genet. 2023-05-25;55(6):952-963.
Publication
released
Single-nucleus chromatin accessibility profiling highlights distinct astrocyte signatures in progressive supranuclear palsy and corticobasal degeneration
Nils Briel, Viktoria C. Ruf, Katrin Pratsch, et al.
Acta Neuropathol. 2022-08-17;144(4):615–635.
Available supplemental data: website
URL: https://github.com/nes-b/snATAC-seq_psp_cbd
Data summary: All scripts for pre-processing and analyzing the snATAC-seq data from PSP/CBD frontal cortex and…
Publication
released
Characterizing cis-regulatory elements using single-cell epigenomics
Sebastian Preissl, Kyle J Gaulton, Bing Ren.
Nat Rev Genet. 2022-07-15;
- doi:10.1038/s41576-022-00509-1
- PMID:35840754
Publication
released
Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease
Hongbo Liu, Tomohito Doke, Dong Guo, et al.
Nature Genetics. 2022-06-16;54:950–962.
- PMID:35710981
- doi:10.1038/s41588-022-01097-w
Available supplemental data: website
URL: https://github.com/hbliu/Kidney_Epi_Pri
Data summary: Customized code used in the present study is available at github
Available supplemental data: website
URL: https://doi.org/10.5281/zenodo.6392494
Data summary: Zenodo
Publication
released
TIGER: The gene expression regulatory variation landscape of human pancreatic islets
Lorena Alonso, Anthony Piron, Ignasi Morán, et al.
Cell Rep. 2021-10-12;37(2):109807.
Data summary: RNA-seq and genotyping array data from PISA cohort Sequence data have been deposited at the…
Publication
released
Characterisation of genetic regulatory effects for osteoporosis risk variants in human osteoclasts
Benjamin H. Mullin, Jennifer Tickner, Kun Zhu, et al.
Genome Biology. 2020-03-26;20(1):80.
URL: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01997-2
Publication
released
Exploring genetic interaction manifolds constructed from rich single-cell phenotypes
Thomas M Norman, Max A Horlbeck, Joseph M Replogle, et al.
Science. 2019-08-23;365(6455):786-793.
Publication
released
High-throughput characterization of genetic effects on DNA-protein binding and gene transcription
Cynthia A Kalita, Christopher D Brown, Andrew Freiman, et al.
Genome Res. 2018-09-25;28(11):1701-1708.
Publication
released
Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells
Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, et al.
Cell Stem Cell. 2018-08-02;23(2):276-288.e8.

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Showing 10 of 42 results