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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
1
accessible chromatin
1
gene expression
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Gene expression levels
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
RNA-seq
Available data
5
bed bed3+
2
bed bed9
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
6
cell line
2
tissue
Biosample term
3
MG63
3
SJSA1
2
kidney
Disease term
59
chronic kidney disease
57
acute kidney failure
55
Acute kidney failure, unspecified
55
Chronic kidney disease (CKD)
54
lung epithelial-myoepithelial carcinoma
24
Philadelphia-positive myelogenous leukemia
20
age-related macular degeneration
18
large-cell immunoblastic lymphoma
15
breast cancer
15
colorectal adenocarcinoma
15
neuroblastoma
12
prostate adenocarcinoma
9
acute lymphoblastic leukemia
9
cervical adenocarcinoma
9
endometrium adenocarcinoma
9
glioblastoma
9
hepatocellular carcinoma
9
parathyroid gland clear cell adenoma
6
Burkitt lymphoma
6
acute promyelocytic leukemia
6
breast ductal adenocarcinoma
6
osteosarcoma
6
plasma cell myeloma
6
renal cell adenocarcinoma
5
coronary artery disease
4
anosmia
4
squamous cell carcinoma
3
Ewing sarcoma
3
adenoid cystic carcinoma
3
clear cell renal carcinoma
3
colon carcinoma
3
fibrosarcoma
3
glioma
3
lung adenocarcinoma
3
lung large cell carcinoma
3
pancreatic adenocarcinoma
3
pancreatic ductal adenocarcinoma
3
prostate cancer
3
prostate carcinoma
3
retinoblastoma
3
testicular embryonal carcinoma
2
diabetes mellitus,hypertensive disorder
2
hypertensive disorder
1
chronic kidney disease, hypertensive disorder
1
colorectal cancer
1
diabetes mellitus, hypertensive disorder
1
diabetic kidney disease, hypertensive disorder
1
heart failure
1
hypertensive disorder, chronic kidney disease
1
small cell lung carcinoma
1
type 2 diabetes mellitus
Organ
6
bone element
2
kidney
Life stage
3
adult
3
child
Date released
6
September, 2022
1
August, 2021
1
February, 2021
Software used
5
r
2
chromhmm
1
macs
Lab
6
AMP-T2D consortium
2
Katalin Susztak, Upenn
Project
8
AMP
RFA
6
AMP
2
AMP2
organ_slims!
skin of body
software_used.software.name!
mach2qtl
Showing 8 of 8 results
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Download
FileSet
DSR499PBK
released
Annotation file set
: Candidate regulatory elements for BSS01550 SJSA1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401QAB
released
Annotation file set
: Candidate regulatory elements for BSS01267 MG63 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544XUG
released
Annotation file set
: Target gene predictions for BSS01550 SJSA1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR428DAS
released
Annotation file set
: Target gene predictions for BSS01267 MG63 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039SIU
released
Annotation file set
: Chromatin states for BSS01550 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048KGB
released
Annotation file set
: Chromatin states for BSS01267 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR992NTS
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP