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Embeddings type
Accessible chromatin
6
Gene expression
Embeddings Category
6
umap
Underlying Assay
10X scRNA-seq
28
Smart-seq
4
10X snRNA-seq
Available data
5
h5ad
2
mtx
2
tsv
1
rds
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
3
heart
1
lung
1
skeletal muscle
1
skeletal muscle tissue
Tissue term
3
heart
2
skeletal muscle tissue
1
lung
Organ
2
heart
2
musculature of body
1
lung
Life stage
2
adult
Date released
1
February, 2023
1
July, 2025
1
June, 2025
1
May, 2022
1
September, 2020
1
September, 2021
Encyclopedia version
1
fusion_consented.snrna_post_decontx.h5ad
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
1
Xin Sun, UCSD
Project
5
AMP
1
LungMap
RFA
3
AMP
2
AMP2
1
LungMap2
embeddings_type!
Accessible chromatin
embeddings_underlying_assay!
10X scRNA-seq
Showing 6 of 6 results
table-tab-icon
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FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap