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Embeddings type
Gene expression
3
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
10X snATAC-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
2
h5ad
1
mtx
1
rds
1
tsv
File set status
3
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
2
islet of Langerhans
1
tissues
Tissue term
2
pancreas
1
tissues
Organ
2
pancreas
Date released
1
February, 2021
1
March, 2024
1
November, 2021
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
embeddings_type!
Gene expression
embeddings_underlying_assay!
10X snATAC-seq
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP