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Embeddings type
  • Gene expression
  • 5Accessible chromatin
Cohort
  • 1HPAP
Embeddings Category
  • 5umap
Underlying Assay
  • 310X snATAC-seq
  • 110X scATAC-seq
  • 1sciATAC-seq
Available data
  • 9h5ad
  • tsv
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File set status
  • 5released
Organism
  • 4Homo sapiens
Biosample type
  • 5tissue
  • 1primary cell
Biosample term
  • 4islet of Langerhans
  • 1lung
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Tissue term
  • 4pancreas
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Organ
  • 4pancreas
  • 1blood
  • 1bodily fluid
  • 1lung
Date released
  • 1August, 2021
  • 1February, 2021
  • 1March, 2024
  • 1October, 2024
  • 1September, 2021
Lab
  • 3Kyle Gaulton, UCSD
  • 1Franck Mauvais-Jarvis Lab
  • 1Xin Sun, UCSD
Project
  • 2AMP
  • 1LungMap
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  • 1community
RFA
  • 2AMP
  • 1LungMap2
  • 1T1D
  • 1community
embeddings_type!
  • Gene expression
files.file_type!
  • tsv

Showing 5 of 5 results

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  • FileSet

    DSR662TAR

    released

    Embeddings file set: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR827MAZ

    released

    Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR722OVR

    released

    Embeddings file set: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
    Lab: Xin Sun, UCSD
    Project: LungMap
  • FileSet

    DSR322WJB

    released

    Embeddings file set: Islet snATAC-seq from control samples
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR047LET

    released

    Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
    Lab: Kyle Gaulton, UCSD
    Project: T1D
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