Showing 6 of 6 results

• FileSet

  DSR291812

  released

  Embeddings file set: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).

  Lab: Stephen Parker, UMich

  Project: AMP

• FileSet

  DSR384UWH

  released

  Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue

  Lab: AMP-T2D consortium

  Project: AMP

• FileSet

  DSR838CLG

  released

  Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues

  Lab: Bing Ren, UCSD

  Project: ENCODE

• FileSet

  DSR722OVR

  released

  Embeddings file set: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old

  Lab: Xin Sun, UCSD

  Project: LungMap

• FileSet

  DSR322WJB

  released

  Embeddings file set: Islet snATAC-seq from control samples

  Lab: Kyle Gaulton, UCSD

  Project: AMP

• FileSet

  DSR047LET

  released

  Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets

  Lab: Kyle Gaulton, UCSD

  Project: T1D