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Embeddings type
1
Accessible chromatin
Gene expression
Embeddings Category
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umap
Available data
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h5ad
File set status
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released
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Homo sapiens
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tissue
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skeletal muscle
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skeletal muscle tissue
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musculature of body
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adult
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July, 2025
Encyclopedia version
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fusion_consented.snatac.h5ad
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AMP-T2D consortium
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Kyle Gaulton, UCSD
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Bing Ren, UCSD
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Franck Mauvais-Jarvis Lab
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Stephen Parker, UMich
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Xin Sun, UCSD
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AMP
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AMP2
embeddings_type!
Gene expression
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP