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Schema
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Embeddings type
3
Accessible chromatin
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X snATAC-seq
Available data
3
h5ad
2
tsv
1
mtx
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle
1
skeletal muscle tissue
Tissue term
4
pancreas
3
skeletal muscle tissue
1
adipose
1
artery
1
blood
1
carotid canal
1
liver
1
lung
1
tissues
Organ
3
musculature of body
Life stage
2
adult
Date released
1
April, 2025
1
July, 2025
1
May, 2022
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
embeddings_type!
Gene expression
Showing 3 of 3 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP